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Codegraph Mcp

# Transform any MCP-compatible LLM into a codebase expert through semantic intelligence A blazingly fast graphRAG implementation. 100% Rust for indexing and querying large codebases with natural language. Supports multiple embedding providers: modes cpu (no graph just AST parsing), onnx (blazingly fast medium quality embeddings with Qdrant/all-MiniLM-L6-v2-onnx) and Ollama (time consuming SOTA embeddings with hf.co/nomic-ai/nomic-embed-code-GGUF:Q4_K_M). I would argue this is the fastest codebase indexer on the Github atm. Includes a Rust SDK made stdio MCP server so that your agents can query the indexed codegraph with natural language and get deep insights from your codebase before starting development or making changes. Currently supports typescript, javascript, rust, go, Python and C++ codebases. 📊 Performance Benchmarking (M4 Max 128GB) Production Codebase Results (1,505 files, 2.5M lines, Python, Javascript, Typescript and Go) 🎉 INDEXING COMPLETE! 📊 Performance Summary ┌───────────────. ─┐ │ 📄 Files: 1,505 indexed │ │ 📝 Lines: 2,477,824 processed │ │ 🔧 Functions: 30,669 extracted │ │ 🏗️ Classes: 880 extracted │ │ 💾 Embeddings: 538,972 generated │ └───────────────. ─┘ Embedding Provider Performance Comparison Provider Time Quality Use Case 🧠 Ollama nomic-embed-code ~15-18h SOTA retrieval accuracy Production, smaller codebases ⚡ ONNX all-MiniLM-L6-v2 32m 22s Good general embeddings Large codebases, lunch-break indexing 📚 LEANN ~4h The next best thing I could find in Github CodeGraph Advantages ✅ Incremental Updates: Only reprocess changed files (LEANN can't do this) ✅ Provider Choice: Speed vs. quality optimization based on needs ✅ Memory Optimization: Automatic optimisations based on your system ✅ Production Ready: Index 2.5M lines while having lunch Read the README.md carefully the installation is complex and requires you to download the embedding model in onnx format and Ollama and setting up multiple environment variables (I would recommend setting these in your bash configuration)

Codegraph Rust

🎯 Overview CodeGraph is a powerful CLI tool that combines MCP (Model Context Protocol) server management with sophisticated code analysis capabilities. It provides a unified interface for indexing projects, managing embeddings, and running MCP servers with multiple transport options. All you now need is an Agent(s) to create your very own deep code and project knowledge synthehizer system! Key Capabilities 🔍 Advanced Code Analysis: Parse and analyze code across multiple languages using Tree-sitter 🚄 Dual Transport Support: Run MCP servers with STDIO, HTTP, or both simultaneously 🎯 Vector Search: Semantic code search using FAISS-powered vector embeddings 📊 Graph-Based Architecture: Navigate code relationships with RocksDB-backed graph storage ⚡ High Performance: Optimized for large codebases with parallel processing and batched embeddings 🔧 Flexible Configuration: Extensive configuration options for embedding models and performance tuning RAW PERFORMANCE ✨✨✨ 170K lines of rust code in 0.49sec! 21024 embeddings in 3:24mins! On M3 Pro 32GB Qdrant/all-MiniLM-L6-v2-onnx on CPU no Metal acceleration used! Parsing completed: 353/353 files, 169397 lines in 0.49s (714.5 files/s, 342852 lines/s) [00:03:24] [########################################] 21024/21024 Embeddings complete ✨ Features Core Features Project Indexing Multi-language support (Rust, Python, JavaScript, TypeScript, Go, Java, C++) Incremental indexing with file watching Parallel processing with configurable workers Smart caching for improved performance MCP Server Management STDIO transport for direct communication HTTP streaming with SSE support Dual transport mode for maximum flexibility Background daemon mode with PID management Code Search Semantic search using embeddings Exact match and fuzzy search Regex and AST-based queries Configurable similarity thresholds Architecture Analysis Component relationship mapping Dependency analysis Code pattern detection Architecture visualization support

Research-Quest: Scientific Discovery Platform

Research-Quest A comprehensive desktop extension implementing the Research-Quest framework for systematic scientific reasoning through an 8-stage graph-based methodology. Overview The Research-Quest desktop extension provides researchers with a powerful tool for conducting systematic scientific analysis through a structured, graph-based approach. This extension implements the complete Research-Quest framework as defined in the Research-Quest.md specification, enabling: - Systematic Research Methodology: 8-stage process from initialization to reflection - Multi-dimensional Confidence Tracking: Bayesian belief updates with statistical rigor - Interdisciplinary Research Support: Bridge nodes connecting different domains - Causal Inference Capabilities: Pearl's do-calculus and counterfactual reasoning - Temporal Pattern Analysis: Dynamic relationship modeling - Bias Detection & Mitigation: Systematic bias identification and correction - Impact Assessment: Research significance and utility estimation - Collaborative Research Features: Multi-researcher attribution and consensus building Architecture 8-Stage Research-Quest Framework 1. Initialization: Create root node with task understanding 2. Decomposition: Break down research task into fundamental dimensions 3. Hypothesis/Planning: Generate competing hypotheses with detailed metadata 4. Evidence Integration: Bayesian confidence updates with typed relationships 5. Pruning/Merging: Graph refinement based on confidence and impact 6. Subgraph Extraction: Focus on high-value research pathways 7. Composition: Generate structured research narratives 8. Reflection: Comprehensive quality audit and validation