Biorxiv

Created By

JackKuo6669 months ago

Overview

What is bioRxiv MCP Server?

The bioRxiv MCP Server is a tool that enables AI assistants to search and access bioRxiv papers through a simple Model Context Protocol (MCP) interface, facilitating access to biology preprints and their metadata.

How to use bioRxiv MCP Server?

To use the bioRxiv MCP Server, clone the repository from GitHub, install the required dependencies, and start the server using Python. You can then query the server for papers or metadata using an AI assistant.

Key features of bioRxiv MCP Server?

🔎 Paper Search: Query bioRxiv papers with keywords or advanced search options.
🚀 Efficient Retrieval: Fast access to paper metadata.
📊 Metadata Access: Retrieve detailed metadata for specific papers.
📄 Paper Access: Download and read paper content.
🗃️ Local Storage: Save papers locally for faster access.
📝 Research Prompts: Specialized prompts for paper analysis.

Use cases of bioRxiv MCP Server?

Searching for recent biology research papers.
Accessing detailed metadata for specific studies.
Facilitating research analysis in biological sciences.

FAQ from bioRxiv MCP Server?

Can I search for papers on any biology topic?

Yes! You can search for papers using keywords related to any biology topic.

Is there a limit to the number of papers I can access?

No, you can access as many papers as available in the bioRxiv repository.

What are the prerequisites for using this server?

You need Python 3.10+ and the FastMCP library installed.

Server Config

{
  "mcpServers": {
    "biorxiv": {
      "command": "bash",
      "args": [
        "-c",
        "source /home/YOUR/PATH/mcp-server-bioRxiv/.venv/bin/activate && python /home/YOUR/PATH/mcp-server-bioRxiv/biorxiv_server.py"
      ],
      "env": {},
      "disabled": false,
      "autoApprove": []
    }
  }
}

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