Pdb Mcp Server

What is PDB MCP Server?

PDB MCP Server is a Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB), which is the global repository for information about the 3D structures of proteins, nucleic acids, and complex assemblies.

How to use PDB MCP Server?

To use the PDB MCP Server, install the server using npm, configure it in your application, and utilize its tools to query and retrieve protein structure data.

Key features of PDB MCP Server?

• Search for protein structures by keyword, name, or PDB ID.
• Retrieve detailed information about specific PDB structures.
• Download structure coordinates in multiple formats (PDB, mmCIF, mmTF, XML).
• Access structure quality metrics and validation data.

Use cases of PDB MCP Server?

1. Researchers can find and analyze protein structures for their studies.
2. Educators can use the server to teach students about protein structures and their functions.
3. Developers can integrate the server into bioinformatics applications for enhanced data access.

FAQ from PDB MCP Server?

• What types of data can I access?

You can access 3D structure data, quality metrics, and validation information for proteins and nucleic acids.

• Is there a limit to the number of queries?

The server has rate limiting to ensure fair usage, but specific limits depend on the API usage policy.

• Can I download structure files?

Yes, you can download structure files in various formats including PDB and mmCIF.