Geneontology Mcp Server
A comprehensive Model Context Protocol server for accessing Gene Ontology (GO) data, enabling AI systems to perform ontology-based analysis, gene annotation research, and functional enrichment studies.
Overview
What is Geneontology MCP Server?
Geneontology MCP Server is a comprehensive Model Context Protocol server designed for accessing Gene Ontology (GO) data, facilitating ontology-based analysis, gene annotation research, and functional enrichment studies.
How to use Geneontology MCP Server?
To use the server, install it via npm, and configure your MCP client to connect to the server using the provided command and arguments.
Key features of Geneontology MCP Server?
- Term Search & Lookup: Search GO terms by keyword, name, or definition.
- Ontology Navigation: Explore hierarchical relationships between terms.
- Gene Annotations: Access GO annotations for genes and proteins.
- Validation: Validate GO identifiers and check term existence.
- Statistics: Get comprehensive ontology statistics and metadata.
Use cases of Geneontology MCP Server?
- Performing ontology-based analysis for biological research.
- Annotating genes and proteins with relevant GO terms.
- Conducting functional enrichment studies in genomics.
FAQ from Geneontology MCP Server?
- Can I search for specific GO terms?
Yes! You can search for GO terms using keywords, names, or definitions.
- How do I validate a GO identifier?
You can use the validate_go_id tool to check if a GO identifier is valid and exists.
- What data sources does the server integrate with?
The server integrates with QuickGO API, GO Consortium, and AmiGO for comprehensive data access.
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