Liana-MCP

Natural language interface for scRNA-Seq analysis with Liana through MCP.

🪩 What can it do?

• IO module like read and write scRNA-Seq data
• Cell-cell communication method
• Plotting module, circle plot, dotplot

❓ Who is this for?

• Anyone who wants to do scRNA-Seq analysis natural language!
• Agent developers who want to call Liana's functions for their applications

🌐 Where to use it?

You can use Liana-mcp in most AI clients, plugins, or agent frameworks that support the MCP:

• AI clients, like Cherry Studio
• Plugins, like Cline
• Agent frameworks, like Agno

🎬 Demo

A demo showing scRNA-Seq cell cluster analysis in a AI client Cherry Studio using natural language based on Liana-mcp

🏎️ Quickstart

Install

Install from PyPI

pip install Liana-mcp

you can test it by running

liana-mcp run

run scnapy-server locally

Refer to the following configuration in your MCP client:

"mcpServers": {
  "liana-mcp": {
    "command": "liana-mcp",
    "args": [
      "run"
    ]
  }
}

run scnapy-server remotely

Refer to the following configuration in your MCP client:

run it in your server

Liana-mcp run --transport shttp --port 8000

Then configure your MCP client, like this:

http://localhost:8000/mcp

🤝 Contributing

If you have any questions, welcome to submit an issue, or contact me(hsh-me@outlook.com). Contributions to the code are also welcome!