PyMOL-MCP

Created By

vrtejus9 months ago

Overview

what is Rosetta Symmetry?

Rosetta Symmetry is a project that integrates PyMOL, a molecular visualization tool, with Claude AI, enabling users to interact with and control PyMOL through natural language commands.

how to use Rosetta Symmetry?

To use Rosetta Symmetry, install the necessary prerequisites, clone the repository, set up the environment, and configure Claude Desktop to connect with PyMOL. Once set up, you can start the connection and use natural language commands to manipulate molecular visualizations.

key features of Rosetta Symmetry?

Two-way communication between Claude AI and PyMOL.
Intelligent command parsing for executing PyMOL commands via natural language.
Control over molecular visualizations, including representations and colors.
Structural analysis capabilities such as measurements and alignments.
Ability to execute arbitrary Python code in PyMOL from Claude.

use cases of Rosetta Symmetry?

Conversational control of molecular visualizations in PyMOL.
Performing structural biology analyses through natural language queries.
Enhancing educational experiences in molecular biology and chemistry.

FAQ from Rosetta Symmetry?

Can I use Rosetta Symmetry on any operating system?

Yes, as long as you have the prerequisites installed, it can run on macOS, Windows, and other platforms.

What are the prerequisites for using Rosetta Symmetry?

You need PyMOL, Claude for Desktop, Python 3.10 or newer, and Git installed on your system.

Is there a community for support?

Yes, you can join the Bio-MCP Community for troubleshooting and feedback.

Server Config

{
  "mcpServers": {
    "rosetta-symmetry": {
      "command": "/Users/ammachi/Developer/GitHub/MCP/mcp-rosetta/venv/bin/python",
      "args": [
        "/Users/ammachi/Developer/GitHub/MCP/mcp-rosetta/pymol_mcp_server.py"
      ]
    }
  }
}

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