MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit โ search, download, track, and analyze functional genomics experiments
Search ENCODE, cross-reference 14 databases, run 7 analysis pipelines, and generate publication-ready methods โ all from natural language in Claude Code.
Start from ENCODE but go everywhere: discover histone peaks, cross-reference with GWAS variants, check ClinVar pathogenicity, pull GTEx expression, analyze TF binding motifs from JASPAR, run pipelines, and generate publication-ready methods with full provenance โ in one conversation.