#bio

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments Search ENCODE, cross-reference 14 databases, run 7 analysis pipelines, and generate publication-ready methods — all from natural language in Claude Code. Start from ENCODE but go everywhere: discover histone peaks, cross-reference with GWAS variants, check ClinVar pathogenicity, pull GTEx expression, analyze TF binding motifs from JASPAR, run pipelines, and generate publication-ready methods with full provenance — in one conversation.

AI agent website builder. Create and publish link-in-bio sites via MCP or REST API.

Identify plants from photos using the Pl@ntNet API. Returns ranked species matches with confidence scores, scientific/common names, and taxonomic data. 3 tools: identify_plant, list_projects, check_quota.

Natural language-driven spatial transcriptomics analysis via MCP. Integrates 60+ analytical methods across 15 categories including preprocessing, visualization, spatial statistics, cell communication, deconvolution, and trajectory analysis.

A production-ready Model Context Protocol (MCP) server that provides comprehensive access to the BioOntology API for searching, annotating, and exploring over 1,200 biological ontologies.

A comprehensive Model Context Protocol (MCP) server that provides access to the Ensembl REST API for genomic data, comparative genomics, and biological annotations.

Model Context Protocol server for accessing Reactome pathway and systems biology data.

A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies.

A comprehensive Model Context Protocol (MCP) server that provides access to the AlphaFold Protein Structure Database through a rich set of tools and resources for protein structure prediction analysis.

A comprehensive Model Context Protocol (MCP) server providing advanced access to the UniProt protein database. This server offers 26 specialized bioinformatics tools enabling AI assistants and MCP clients to perform sophisticated protein research, comparative genomics, structural biology analysis, and systems biology investigations directly through UniProt's REST API.

Bio MCP server that deals with longevity databases (open-genes, genage and so on)

A full-featured Model Context Protocol (MCP) server that exposes Ensembl’s REST API. Built using the TypeScript MCP SDK

A compilation for all the available bio agent

A comprehensive Model Context Protocol (MCP) server that provides access to the Ensembl REST API for genomic data, comparative genomics, and biological annotations.

Model Context Protocol server for accessing Reactome pathway and systems biology data.

A Model Context Protocol (MCP) server enabling AI agents to intelligently search, retrieve, and analyze biomedical literature from PubMed via NCBI E-utilities. Includes a research agent scaffold. STDIO & HTTP

A comprehensive Model Context Protocol (MCP) server providing advanced access to the UniProt protein database.

Model Context Protocol (MCP) compatible server focused on the sandbox game Albion Online, for AI agents.

MCP server for calculating biological age using the Morgan Levine PhenoAge clock

Explore the Unofficial UniProt MCP Server, your gateway to advanced protein analysis with 26 specialized tools. Join the community and enhance your research capabilities today! 🐙🌟

Acalytica enables individuals and businesses to: Build beautiful, one-page websites (MyLinks) Track and analyze user engagement Create QR codes, social proof notifications, and digital storefronts Monetize their content and services with built-in tools

docker-based mcp server that enables Claude to fetch biological sequence data from NCBI

MCP (Model Context Protocol) server for biothings

This MCP server provides a programmatic interface to the Genome Aggregation Database (gnomAD) API, supporting multiple API versions (v2.1.1, v3.1.2, v4.1.0). It abstracts version-specific field and schema differences, exposing a unified API for downstream tools and users.

This MCP server provides a programmatic interface to the GWAS Catalog REST API, enabling access to GWAS study, variant, trait, and association data.

This MCP server provides a programmatic interface to the Broad Institute's Liftover tool, which is available at liftover.broadinstitute.org.

A MCP Server for accessing and analyzing clinical evidence data, with flexible search options to support precision medicine and oncology research.

MCP Server for PrimeKG dataset

✈ MCP For Plane.so

MCP server for bioinformaticians and computational biologists

BioMCP: Biomedical Model Context Protocol

NIH's National Center of Biology Information's MCP Server

私のポートフォリオサイトです。Rimlについて知ることができます。

🔍 A biomedical literature annotation and relationship mining server based on PubTator3, providing convenient access through the MCP interface.

Mirror of

A MCP Server for biomedical Literature Database

MCP servers for Protein Data Bank, ChemBL, and other life science data (WIP), with Ollama client for local testing.

A MCP server for PubMed data